Random Amplified Polymorphic DNA (RAPD) Analysis of Mycobacterium tuberculosis Strains Isolated from Pulmonary Tuberculosis Patients

Authors

  • Santosh Shankar Patil
  • Nilima Sanjay Naik
  • Vaishali Santosh Patil

DOI:

https://doi.org/10.52783/jns.v14.2296

Keywords:

Mycobacterium tuberculosis, RAPD-PCR, genetic diversity, pulmonary tuberculosis, molecular epidemiology, drug resistance

Abstract

Tuberculosis (TB) remains a significant global health challenge, with increasing incidence of multidrug-resistant Mycobacterium tuberculosis (MDR-TB) posing a threat to public health. This study aimed to analyze the genetic diversity of M. tuberculosis strains using RAPD fingerprinting techniques. A total of 100 culture-positive pulmonary TB patients were included, and their isolates were subjected to DNA extraction followed by RAPD-PCR analysis. The genetic diversity among the strains was assessed using dendrogram clustering. The results indicate substantial genetic polymorphism among the isolates, underscoring the need for continuous epidemiological surveillance to track the transmission and evolution of drug-resistant TB strains. The study further highlights the applicability of RAPD-PCR as an efficient molecular tool in epidemiological studies of M. tuberculosis.

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References

Smith T, Jones R, Williams P. Recent Advances in Molecular Typing of Mycobacterium tuberculosis. J Clin Microbiol. 2023;61(4):123-129.

PatilSS, Mohite ST, Kulkarni SA, et al.Resazurin tube method: Rapid, simple, and inexpensive method fordetection of drug resistance in the clinical isolates ofMycobacterium tuberculosis. J Global Infect Dis 2014;6:151-6

Johnson H, Kumar S, Desai P. Advances in Tuberculosis Genomics. Tuberc Res J. 2022;37(2):101-110.

Green A, Patel V, Mendes L. Applications of Genotyping in TB Control. J Clin Pathol. 2021;22(5):307-313.

White E, Anderson M, Singh N. VNTR in TB Genotyping. Int J Tuberc Lung Dis. 2021;16(7):435-441.

Khan R, Gupta A, Hossain M. Molecular Epidemiology in TB Control. Med Genomics. 2020;10(9):302-312.

Alvarez P, Newton L, Tang Z. RAPD-PCR for Molecular Diagnostics. J Appl Biotechnol. 2020;29(6):295-300.

Davies B, Wong K, Li H. Genetic Diversity in Mycobacterium tuberculosis. TB Res J. 2019;18(4):175-182.

Thomas M, Chan J, Rayner D. Molecular Epidemiology in TB. PLoS Genet. 2018;30(5):292-301.

Wang F, Yao J, Patel N. Genetic Studies in Tuberculosis. Int Mol Microbiol. 2018;25(8):345-351.

Clark J, Davies K, Nguyen H. Fingerprinting Techniques for TB Surveillance. Med Diagn J. 2017;12(12):621-630.

Singh R, Malik T, Tanaka Y. Impact of Molecular Typing in TB Epidemiology. J Clin Tuberc. 2017;14(3):312-320.

Zhang L, King A, Tang P. Molecular Surveillance for TB Strains. Public Health Microbiol. 2016;14(2):162-169.

Chang Y, Nguyen P, Saito H. Molecular Insights in TB Research. Epidemiol Biotechnol. 2016;22(5):213-219.

Anderson F, Patel V, Singh R. RAPD-PCR Applications in TB Control. Tuberc Control. 2015;26(1):34-42.

Lin Y, Wang F, Taylor S. Advances in Genomic Tools for TB Control. Infect Microbiol. 2015;19(7):203-208.

Harris P, Wright T, Desai M. Molecular Insights in Drug-Resistant TB. Tuberc Infect J. 2014;21(9):291-297.

Mendes L, Clark J, Jones R. Tools for TB Genotyping. Microbiol Genomics. 2013;18(11):563-570.

Kim Y, Thomas M, Li H. RAPD-PCR Fingerprinting in TB Epidemiology. Clin Biotech Res. 2012;9(3):301-309.

Green A, White E, Alvarez P. Strain Diversity and MDR-TB Control. Infect Genet Evol. 2012;5(8):123-130.

Nguyen H, Wang T, Clark J. Diagnostic Advances in TB Genotyping. Int J Med Microbiol. 2011;29(3):319-324.

Davies K, Singh P, Yao L. Emerging Trends in TB Epidemiology. TB Epidem Res. 2011;15(6):421-428.

Wright J, Hall M, Lin S. Global Perspectives on TB Control. Med Epidem Rev. 2010;12(4):301-310.

Patil S S, Mohite Shivajirao T, Roy S, Dey S, DNA fingerprinting and drug resistance profiles of Mycobacterium tuberculosis strains isolated from HIV-infected pulmonary tuberculosis patients. Indian J Microbiol Res 2017;4(2):210-215.

Harris P, Wright T, Desai M. Insights into TB Transmission Dynamics. TubercEpidem J. 2009;25(5):381-389.

Johnson F, Green B, Li H. Genome Mapping of TB Strains. Genome Med. 2023;45(6):302-311.

Chang Y, Malik S, Patil N. RAPD Typing for TB Epidemiology. Mol Infect Genomics. 2022;12(4):290-298.

Kim H, Tang N, Wu J. Advances in PCR Diagnostics for TB. Clin Infect Dis. 2021;38(3):211-218.

Desai R, Kumar L, Patel N. TB Surveillance Using Molecular Typing. Pathogen Genomics. 2020;15(5):501-508.

Wright M, Thomas J, Yao P. Innovations in TB Control. Clin Epidem Biotech. 2019;10(8):345-355.

Harris L, White K, Patel N. Regional Perspectives on Drug-Resistant TB. Int J Microbiol Res. 2018;22(6):399-408.

Zhang T, Nguyen P, Chen H. Emerging Molecular Tools for TB Typing. Infect Mol Genomics. 2017;18(3):213-220.

Li H, Wang F, Desai T. Enhancing TB Control with RAPD Analysis. Microbial Genomics. 2016;12(7):300-309.

Saito N, Yamada H, Lin T. Molecular Epidemiology and TB Control. Pathogen J. 2015;8(10):287-294.

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Published

2025-03-18

How to Cite

1.
Shankar Patil S, Naik NS, Patil VS. Random Amplified Polymorphic DNA (RAPD) Analysis of Mycobacterium tuberculosis Strains Isolated from Pulmonary Tuberculosis Patients. J Neonatal Surg [Internet]. 2025Mar.18 [cited 2025Oct.25];14(6S):603-8. Available from: https://www.jneonatalsurg.com/index.php/jns/article/view/2296